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North Sumatra provincial government reported that 47,143 hogs of the total 1,224,951, died of African Swine Fever (ASF) that spread to 21 districts.
A hoax claiming that pork diseases could infect humans was spread in September last year across several Indonesian regions, causing fear and panic.
China will go with fewer pork dishes as African swine fever has decimated pig herds.
Agriculture Minister Syahrul said he would beef up insulation and quarantine following the alleged outbreak of African swine fever.
The Philippine hog industry is losing nearly $20 million a month from African swine fever infections.
El Tari Airport of Kupang has strengthened goods inspection, especially on agriculture products, to prevent the spread of African Swine Fever.
Thailand has been on high alert since the outbreak of African swine fever among pigs in Myanmar, Laos, Cambodia, but it has yet to report an outbreak.
The Philippines has banned imports of pigs and pig products from Laos due to an African swine fever outbreak.
FAO on Tuesday advised Vietnam to declare a rapidly spreading outbreak of African Swine Fever as a national emergency.
U.S. border agents have seized around 1 million pounds of pork from China over suspicions that it might contain African swine fever.
Pigs in central Japan's Aichi prefecture have been found with swine fever.